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Tomita, M., et al.
E-Cell: Software environment for whole cell simulation.
Bioinformatics 15, 72-84 (1999).
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E-Cell Project at
http://www.e-cell.org
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E-Cell 3 development site at
http://bioinformatics.org/project/?group_id=46
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Gamma, E., Helm, R., Johnson, R. & Vlissides, J.
Design Patterns (Addison Wesley Longman, Inc., 1995).
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Morton-Firth, C. J. & Bray, D.
Predicting temporal fluctuations in an intracellular signalling pathway.
J Theoret Biol 192, 117-128 (1998).
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Gillespie, D. T. A general method for
numerically simulating the stochastic time evolution of coupled chemical
reactions. J. Comput. Phys. 22, 403-434 (1976).
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Stochastic Simulation of Chemical Systems with Many Species and Many
Channnels.; J. Phy. Chem. 104,1876-1889 (2000)
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Savageau, M. A. Biochemical systems analysis. A study of function and design in molecular biology
(Reading, Massachusetts, Addison-Wesley, 1976).
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Systems Biology Markup Language at
http://www.cds.caltech.edu/erato
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CellML at
http://www.cellml.org
2003-02-08